7B0D

Sugar transaminase from Archaeoglobus veneficus

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	MICROBATCH	4.2	291	0.1 M phosphate/citrate 20 % w/v PEG 6K

Crystal Properties
Matthews coefficient	Solvent content
2.26	45.54

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 70.227	α = 90
b = 105.953	β = 90
c = 111.216	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2013-12-14	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.9200	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.27	49.29	97.7	0.04	1	17.3	5		212879

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.27	1.29	87		1.352	0.305	0.9	3.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3nyu	1.27	49.287	212778	10625	97.585	0.153	0.1516	0.1747	21.446

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.31			0.078		0.232

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.117
r_dihedral_angle_4_deg	17.695
r_dihedral_angle_3_deg	14.353
r_lrange_it	7.875
r_lrange_other	7.871
r_scangle_it	6.622
r_scangle_other	6.554
r_dihedral_angle_1_deg	6.167
r_scbond_it	4.894
r_scbond_other	4.79
r_mcangle_other	3.759
r_mcangle_it	3.758
r_mcbond_it	2.673
r_mcbond_other	2.65
r_angle_refined_deg	1.665
r_angle_other_deg	1.377
r_nbd_refined	0.22
r_nbd_other	0.203
r_xyhbond_nbd_refined	0.189
r_symmetry_nbd_other	0.179
r_symmetry_xyhbond_nbd_refined	0.174
r_nbtor_refined	0.172
r_symmetry_nbd_refined	0.162
r_xyhbond_nbd_other	0.158
r_ncsr_local_group_1	0.117
r_symmetry_nbtor_other	0.085
r_chiral_restr	0.084
r_bond_refined_d	0.011
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5982
Nucleic Acid Atoms
Solvent Atoms	725
Heterogen Atoms	129

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
MoRDa	phasing
Coot	model building