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4-(2-(3-(4-iodophenyl)thioureido)ethyl)benzenesulfonamide in complex with Carbonic Anhydrase II
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FIK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 296 1.5-1.7 M sodium citrate
0.1 M Tris pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.11 41.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.45 α = 90 b = 41.6 β = 104.5 c = 72.25 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2020-09-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 0.999900 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 41.6 97.1 0.063 0.066 0.019 0.89 28.5 12.3 31428
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 0.122 0.133 0.052 0.65
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 4FIK 1.6 40.121 31387 1531 96.62 0.148 0.1461 0.1595 0.182 0.1929 11.924
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.108 0.056 -0.235 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.228 r_dihedral_angle_4_deg 23.541 r_dihedral_angle_3_deg 12.46 r_dihedral_angle_1_deg 7.054 r_lrange_it 4.993 r_lrange_other 4.992 r_scangle_it 4.584 r_scangle_other 4.583 r_scbond_it 3.013 r_scbond_other 3.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.228 r_dihedral_angle_4_deg 23.541 r_dihedral_angle_3_deg 12.46 r_dihedral_angle_1_deg 7.054 r_lrange_it 4.993 r_lrange_other 4.992 r_scangle_it 4.584 r_scangle_other 4.583 r_scbond_it 3.013 r_scbond_other 3.011 r_mcangle_other 2.283 r_mcangle_it 2.263 r_angle_refined_deg 1.87 r_mcbond_other 1.467 r_mcbond_it 1.466 r_angle_other_deg 1.464 r_nbd_refined 0.245 r_symmetry_nbd_refined 0.219 r_symmetry_nbd_other 0.195 r_nbtor_refined 0.177 r_nbd_other 0.172 r_xyhbond_nbd_refined 0.14 r_symmetry_xyhbond_nbd_refined 0.113 r_chiral_restr 0.09 r_symmetry_nbtor_other 0.086 r_metal_ion_refined 0.046 r_bond_refined_d 0.013 r_gen_planes_refined 0.012 r_symmetry_xyhbond_nbd_other 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2036 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling REFMAC phasing