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Ny-Hydroxyasparagine: A Multifunctional Unnatural Amino Acid That is a Good P1 Substrate of Asparaginyl Peptide Ligases
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 0.5 mM H ASN(OH)-RTD1 90% H2O/10% D2O 0 4-5 1 bar 298 Bruker AVANCE 600 3 2D 1H-1H NOESY 0.5 mM H ASN(OH)-RTD1 90% H2O/10% D2O 0 4-5 1 bar 298 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria structures with acceptable covalent geometry Conformers Calculated Total Number 100 Conformers Submitted Total Number 9 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CYANA Guntert, Mumenthaler and Wuthrich 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment NMRFAM-SPARKY Lee et al. Bioinformatics 2015 Apr; 31(8):1325-7 4 peak picking NMRFAM-SPARKY Lee et al. Bioinformatics 2015 Apr; 31(8):1325-7 5 structure calculation PREDITOR M. V. Berjanskii, S. Neal, D. S. Wishart, Nucleic Acids Res., 2006, 34, W63-W69.