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HPK1 IN COMPLEX WITH COMPOUND 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other PREVIOUSLY SOLVED STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 20 mM Tris pH 8.0 , 150 mM NaCl , 5% Glycerol , 2 mM DTT
Crystal Properties Matthews coefficient Solvent content 2.32 46.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.85 α = 89.97 b = 76.723 β = 97.84 c = 88.413 γ = 90.03
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-05-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0001 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.43 87.59 96.1 0.043 0.057 0.999 12.89 2.2 42306 61.068
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.43 2.68 96.2 0.433 0.563 0.998 2.99 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PREVIOUSLY SOLVED STRUCTURE 2.43 87.59 41326 980 96.06 0.247 0.2459 0.2472 0.2928 0.287 RANDOM 94.047
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.31 0.07 6.36 -3.83 -0.11 -2.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.716 r_dihedral_angle_4_deg 16.685 r_dihedral_angle_3_deg 12.975 r_dihedral_angle_1_deg 7.494 r_angle_refined_deg 1.572 r_angle_other_deg 1.241 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.716 r_dihedral_angle_4_deg 16.685 r_dihedral_angle_3_deg 12.975 r_dihedral_angle_1_deg 7.494 r_angle_refined_deg 1.572 r_angle_other_deg 1.241 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9102 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 124
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction REFMAC phasing