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Glutathione-S-transferase GliG mutant S83A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7NC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 0.2 M ammonium acetate, 0.1 M bis-tris pH 5.5, 24 % PEG3350
Crystal Properties Matthews coefficient Solvent content 2.33 47.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.11 α = 90 b = 85.84 β = 90 c = 347.8 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 48 98.3 0.078 9.5 3.6 126946
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 0.544 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7NC3 1.9 30 120563 6346 98.3 0.1843 0.1825 0.1915 0.2204 0.2275 RANDOM 35.933
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.21 -2.65 -2.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.453 r_dihedral_angle_3_deg 12.519 r_dihedral_angle_4_deg 10.767 r_dihedral_angle_1_deg 5.832 r_angle_refined_deg 1.152 r_angle_other_deg 1.093 r_rigid_bond_restr 0.489 r_chiral_restr 0.046 r_gen_planes_refined 0.003 r_bond_refined_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.453 r_dihedral_angle_3_deg 12.519 r_dihedral_angle_4_deg 10.767 r_dihedral_angle_1_deg 5.832 r_angle_refined_deg 1.152 r_angle_other_deg 1.093 r_rigid_bond_restr 0.489 r_chiral_restr 0.046 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11569 Nucleic Acid Atoms Solvent Atoms 743 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHASER phasing