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Crystal structure of GH30 (double mutant EE) from Thermothelomyces thermophila.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6KRL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG1500, TBG buffer
Crystal Properties Matthews coefficient Solvent content 1.94 30.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.887 α = 90 b = 87.315 β = 90 c = 107.917 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2020-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.36 45.9 99.7 1 19.8 12.1 79578
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.36 1.38 0.539
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6KRL 1.36 43.696 79501 4024 99.574 0.124 0.1221 0.1581 0.1444 15.592
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.389 -0.823 -0.566
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.26 r_dihedral_angle_4_deg 19.091 r_dihedral_angle_3_deg 11.503 r_dihedral_angle_1_deg 6.96 r_lrange_it 3.194 r_lrange_other 3.193 r_scangle_it 2.403 r_scangle_other 2.403 r_scbond_it 2.066 r_scbond_other 2.065
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.26 r_dihedral_angle_4_deg 19.091 r_dihedral_angle_3_deg 11.503 r_dihedral_angle_1_deg 6.96 r_lrange_it 3.194 r_lrange_other 3.193 r_scangle_it 2.403 r_scangle_other 2.403 r_scbond_it 2.066 r_scbond_other 2.065 r_mcangle_it 1.998 r_mcangle_other 1.998 r_rigid_bond_restr 1.898 r_angle_refined_deg 1.576 r_angle_other_deg 1.545 r_mcbond_it 1.524 r_mcbond_other 1.523 r_symmetry_nbd_refined 0.214 r_nbd_refined 0.212 r_nbd_other 0.208 r_symmetry_nbd_other 0.188 r_nbtor_refined 0.171 r_symmetry_xyhbond_nbd_refined 0.16 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.083 r_symmetry_nbtor_other 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3331 Nucleic Acid Atoms Solvent Atoms 515 Heterogen Atoms 107
Software Software Software Name Purpose REFMAC refinement Aimless data reduction XDS data scaling PHASER phasing