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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH (R)-N5-cyclopropyl-N3-methyl-2-oxo-1-(1-phenylethyl)-1,2-dihydropyridine-3,5-dicarboxamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other in house
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.24 45.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.86 α = 90 b = 52.31 β = 90 c = 31.97 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.28 35.93 96.8 0.998 15.1 4.4 30641
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.28 1.31 84.8 0.492 1.6 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE in house 1.28 35.93 30594 1542 96.141 0.175 0.1736 0.1818 0.1933 0.2004 19.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.005 0.003 -0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.727 r_dihedral_angle_4_deg 19.301 r_dihedral_angle_3_deg 11.576 r_lrange_it 5.097 r_lrange_other 5.095 r_dihedral_angle_1_deg 4.916 r_scangle_it 2.157 r_scangle_other 2.155 r_mcangle_other 1.436 r_mcangle_it 1.434
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.727 r_dihedral_angle_4_deg 19.301 r_dihedral_angle_3_deg 11.576 r_lrange_it 5.097 r_lrange_other 5.095 r_dihedral_angle_1_deg 4.916 r_scangle_it 2.157 r_scangle_other 2.155 r_mcangle_other 1.436 r_mcangle_it 1.434 r_angle_other_deg 1.36 r_scbond_it 1.296 r_scbond_other 1.294 r_angle_refined_deg 1.202 r_mcbond_it 0.845 r_mcbond_other 0.835 r_nbd_refined 0.206 r_nbtor_refined 0.174 r_symmetry_nbd_other 0.164 r_nbd_other 0.162 r_symmetry_nbd_refined 0.121 r_symmetry_nbtor_other 0.082 r_xyhbond_nbd_refined 0.082 r_chiral_restr 0.066 r_symmetry_xyhbond_nbd_refined 0.052 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 914 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling