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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH (S)-N4-cyclopropyl-N2-methyl-6-(1-phenylethyl)pyridine-2,4-dicarboxamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.25 45.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.889 α = 90 b = 52.382 β = 90 c = 32.114 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2010-01-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 32.11 98.5 0.061 0.997 13.2 2.8 12927
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.83 98.3 0.4 0.792 2.6 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.735 29.638 12895 659 98.195 0.163 0.1614 0.1759 0.1944 0.2084 19.004
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.492 -0.071 0.564
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.819 r_dihedral_angle_4_deg 23.606 r_dihedral_angle_3_deg 14.195 r_lrange_it 6.398 r_lrange_other 6.064 r_dihedral_angle_1_deg 5.28 r_scangle_it 3.331 r_scangle_other 3.328 r_mcangle_other 3.041 r_mcangle_it 3.025
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.819 r_dihedral_angle_4_deg 23.606 r_dihedral_angle_3_deg 14.195 r_lrange_it 6.398 r_lrange_other 6.064 r_dihedral_angle_1_deg 5.28 r_scangle_it 3.331 r_scangle_other 3.328 r_mcangle_other 3.041 r_mcangle_it 3.025 r_scbond_it 1.943 r_scbond_other 1.942 r_mcbond_it 1.739 r_mcbond_other 1.613 r_angle_other_deg 1.246 r_angle_refined_deg 1.218 r_nbd_refined 0.2 r_symmetry_nbd_other 0.171 r_nbtor_refined 0.168 r_xyhbond_nbd_refined 0.162 r_nbd_other 0.143 r_symmetry_xyhbond_nbd_refined 0.139 r_symmetry_nbd_refined 0.128 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.065 r_symmetry_xyhbond_nbd_other 0.017 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 923 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling