7NYO

Mutant A541L of SH3 domain of JNK-interacting Protein 1 (JIP1)

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	7.5	293	0.1 M HEPES pH 7.5, 1-5 % PEG 400 and 2-2.5 M ammonium sulfate

Crystal Properties
Matthews coefficient	Solvent content
2	40.5

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 96.093	α = 90
b = 67.104	β = 126.701
c = 59.142	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2020-10-30	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-2	0.873128	ESRF	ID23-2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.4	47.418	91.9	0.982	5.5	5.3		41884

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.4	1.51			0.74	1.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	7NYK	1.4	47.418	41728	2116	70.412	0.197	0.1923	0.2759	23.522

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.592		0.556	-0.402		-0.956

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	25.678
r_dihedral_angle_3_deg	17.035
r_dihedral_angle_4_deg	15.366
r_dihedral_angle_1_deg	8.5
r_lrange_it	7.576
r_lrange_other	6.805
r_scangle_it	4.787
r_scangle_other	4.785
r_mcangle_it	3.907
r_mcangle_other	3.905
r_scbond_it	3.886
r_scbond_other	3.884
r_mcbond_it	3.231
r_mcbond_other	3.23
r_rigid_bond_restr	3.212
r_angle_refined_deg	1.665
r_angle_other_deg	1.315
r_nbd_refined	0.278
r_xyhbond_nbd_refined	0.266
r_symmetry_xyhbond_nbd_refined	0.251
r_symmetry_nbd_refined	0.231
r_nbd_other	0.228
r_symmetry_nbd_other	0.221
r_nbtor_refined	0.174
r_symmetry_xyhbond_nbd_other	0.135
r_chiral_restr	0.084
r_symmetry_nbtor_other	0.079
r_bond_refined_d	0.01
r_gen_planes_refined	0.01
r_bond_other_d	0.005
r_gen_planes_other	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2013
Nucleic Acid Atoms
Solvent Atoms	525
Heterogen Atoms	48

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
autoPROC	data scaling
PHASER	phasing