7O1Z

Unspecific peroxygenase from Hypoxylon sp. EC38 in complex with S-1,2-propanediol


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP29320% PEG500 MME, 10% PEG20000, 0.1 M MES monohydrate pH 6.5
Crystal Properties
Matthews coefficientSolvent content
3.4264.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.468α = 90
b = 71.468β = 90
c = 152.655γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2020-05-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.848.021000.0610.0630.0180.99925.712.737610
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.841000.4160.4340.120.96112.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.848.0236394113899.950.1240.12260.1678RANDOM24.589
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.870.87-1.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.942
r_dihedral_angle_4_deg22.888
r_dihedral_angle_3_deg12.478
r_dihedral_angle_1_deg6.076
r_rigid_bond_restr4.055
r_angle_refined_deg2.011
r_angle_other_deg1.573
r_chiral_restr0.095
r_bond_refined_d0.016
r_gen_planes_refined0.011
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.942
r_dihedral_angle_4_deg22.888
r_dihedral_angle_3_deg12.478
r_dihedral_angle_1_deg6.076
r_rigid_bond_restr4.055
r_angle_refined_deg2.011
r_angle_other_deg1.573
r_chiral_restr0.095
r_bond_refined_d0.016
r_gen_planes_refined0.011
r_gen_planes_other0.008
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1737
Nucleic Acid Atoms
Solvent Atoms195
Heterogen Atoms105

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing