7OA1

Crystal structure of alfa carbonic anhydrase from Schistosoma mansoni with 4-(2-(3-(4-iodophenyl)ureido)ethyl)benzenesulfonamide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP529620% PEG 6000, 0.1 M citrate pH 5.0
Crystal Properties
Matthews coefficientSolvent content
2.8957.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.5α = 90
b = 103.5β = 90
c = 133.29γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2020-10-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 11.2C1.0ELETTRA11.2C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7589.6499.40.0890.0920.99918.171683597
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.7994.30.5230.5570.9072.48

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTNONE6qqm289.63456292281899.9630.1660.16430.194428.416
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.2950.1480.295-0.958
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.649
r_dihedral_angle_4_deg18.973
r_dihedral_angle_3_deg13.833
r_lrange_it7.889
r_lrange_other7.859
r_scangle_other7.844
r_scangle_it7.839
r_dihedral_angle_1_deg7.692
r_scbond_it5.315
r_scbond_other5.314
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.649
r_dihedral_angle_4_deg18.973
r_dihedral_angle_3_deg13.833
r_lrange_it7.889
r_lrange_other7.859
r_scangle_other7.844
r_scangle_it7.839
r_dihedral_angle_1_deg7.692
r_scbond_it5.315
r_scbond_other5.314
r_mcangle_it3.769
r_mcangle_other3.724
r_mcbond_it2.929
r_mcbond_other2.928
r_angle_refined_deg1.865
r_angle_other_deg1.44
r_symmetry_nbd_refined0.34
r_nbd_other0.245
r_nbd_refined0.203
r_symmetry_nbd_other0.191
r_nbtor_refined0.174
r_xyhbond_nbd_refined0.146
r_metal_ion_refined0.139
r_symmetry_xyhbond_nbd_refined0.131
r_chiral_restr0.099
r_symmetry_nbtor_other0.093
r_bond_refined_d0.013
r_gen_planes_refined0.011
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4473
Nucleic Acid Atoms
Solvent Atoms312
Heterogen Atoms152

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
REFMACphasing