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CRYO-EM STRUCTURE OF UNDECAMERIC SLYB FROM ESCHERICHIA COLI K12
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.7494 f_angle_d 0.902 f_chiral_restr 0.0516 f_bond_d 0.0055 f_plane_restr 0.0045
Sample Outer membrane lipoprotein SlyB
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument GATAN CRYOPLUNGE 3 Cryogen Name ETHANE Sample Vitrification Details Back-blotting for 4 seconds before plunging
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 145472 Reported Resolution (Å) 3.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C11
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value 35 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 61
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model JEOL CRYO ARM 300 Minimum Defocus (nm) 600 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.55 Imaging Mode BRIGHT FIELD Specimen Holder Model JEOL CRYOSPECPORTER Nominal Magnification 60000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO 1.7 IMAGE ACQUISITION SerialEM 3.8.2 CTF CORRECTION RELION 3.1 CTF CORRECTION CTFFIND 4 CTF CORRECTION MotionCorr2 1.3 CTF CORRECTION PHENIX CTF CORRECTION Coot 0.8.9 CTF CORRECTION UCSF Chimera 1.15 CTF CORRECTION PyMOL 2.2 CTF CORRECTION SerialEM MODEL FITTING Coot MODEL REFINEMENT PHENIX CLASSIFICATION RELION 3.1 RECONSTRUCTION RELION 3.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE