☰ Navigation Tabs
Crystal Structure of TAP01 in complex with amyloid beta peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4F33 4F33, 1I7Z experimental model PDB 1I7Z 4F33, 1I7Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 292 20% PEG3350
0.2 M ammonium citrate
Crystal Properties Matthews coefficient Solvent content 2.28 46.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.179 α = 90 b = 71.179 β = 90 c = 173.37 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-04-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.968625 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 55.7 99.6 0.986 10.3 7.9 694016
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 0.646
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4F33, 1I7Z 1.4 55.07 83576 4413 99.46 0.15411 0.15171 0.1524 0.20035 0.2009 RANDOM 20.928
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -0.22 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.167 r_dihedral_angle_4_deg 11.769 r_dihedral_angle_3_deg 11.093 r_dihedral_angle_1_deg 7.07 r_long_range_B_refined 3.675 r_long_range_B_other 3.139 r_scangle_other 2.352 r_mcangle_other 2.064 r_mcangle_it 2.061 r_rigid_bond_restr 2.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.167 r_dihedral_angle_4_deg 11.769 r_dihedral_angle_3_deg 11.093 r_dihedral_angle_1_deg 7.07 r_long_range_B_refined 3.675 r_long_range_B_other 3.139 r_scangle_other 2.352 r_mcangle_other 2.064 r_mcangle_it 2.061 r_rigid_bond_restr 2.058 r_scbond_it 1.82 r_scbond_other 1.812 r_angle_refined_deg 1.581 r_mcbond_it 1.539 r_mcbond_other 1.533 r_angle_other_deg 1.108 r_chiral_restr 0.103 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3374 Nucleic Acid Atoms Solvent Atoms 510 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing