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Crystal structure of carbonic anhydrase XII with methyl 2-(benzenesulfonyl)-4-chloro-5-sulfamoylbenzoate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4HT2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1M ammonium citrate (pH 7.0), 0.2 M ammonium sulfate and 30% PEG4000
Crystal Properties Matthews coefficient Solvent content 2.09 41.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.434 α = 90 b = 74.46 β = 108.95 c = 91.913 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.97970 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.399 86.933 97.6 0.08 0.112 0.052 11.4 4.2 189636 189636
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 85.2 0.158 0.158 0.214 0.107 4 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4HT2 1.4 73.24 170686 18914 97.58 0.1649 0.1592 0.1582 0.217 0.2165 RANDOM 18.536
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.88 -0.07 2.17 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.704 r_sphericity_free 26.512 r_dihedral_angle_4_deg 18.618 r_sphericity_bonded 17.811 r_dihedral_angle_3_deg 12.621 r_dihedral_angle_1_deg 7.451 r_rigid_bond_restr 7.396 r_angle_refined_deg 2.047 r_chiral_restr 0.221 r_gen_planes_refined 0.018
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.704 r_sphericity_free 26.512 r_dihedral_angle_4_deg 18.618 r_sphericity_bonded 17.811 r_dihedral_angle_3_deg 12.621 r_dihedral_angle_1_deg 7.451 r_rigid_bond_restr 7.396 r_angle_refined_deg 2.047 r_chiral_restr 0.221 r_gen_planes_refined 0.018 r_bond_refined_d 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8336 Nucleic Acid Atoms Solvent Atoms 1143 Heterogen Atoms 135
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction MOLREP phasing Coot model building