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Structure of the R57Q mutant of miniSOG expressed in E. coli in regular LB medium
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6GPU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 100 mM Tris-Hcl pH 8.0, 20 mM MgCl2, 28% PEG 4000, 15 mM CoCl2
Crystal Properties Matthews coefficient Solvent content 2.04 39.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.951 α = 90 b = 39.951 β = 90 c = 133.581 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M TOROIDAL MIRROR 2014-05-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9322 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 38.28 100 0.084 1 15.5 12.4 45101 14.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.14 100 1.199 0.596 1.9 11.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6GPU 1.1 38.28 45100 2275 99.971 0.145 0.1443 0.1452 0.1702 0.1711 13.784
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.201 -0.201 0.401
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.412 r_dihedral_angle_4_deg 16.212 r_dihedral_angle_3_deg 13.574 r_dihedral_angle_1_deg 7.136 r_scangle_it 4.193 r_scangle_other 4.191 r_rigid_bond_restr 4.052 r_scbond_other 3.847 r_scbond_it 3.839 r_lrange_it 3.598
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.412 r_dihedral_angle_4_deg 16.212 r_dihedral_angle_3_deg 13.574 r_dihedral_angle_1_deg 7.136 r_scangle_it 4.193 r_scangle_other 4.191 r_rigid_bond_restr 4.052 r_scbond_other 3.847 r_scbond_it 3.839 r_lrange_it 3.598 r_lrange_other 3.531 r_angle_refined_deg 2.246 r_mcangle_other 2.045 r_mcangle_it 2.009 r_mcbond_it 1.636 r_mcbond_other 1.576 r_angle_other_deg 1.541 r_metal_ion_refined 0.328 r_symmetry_xyhbond_nbd_other 0.31 r_symmetry_xyhbond_nbd_refined 0.297 r_symmetry_nbd_refined 0.293 r_nbd_other 0.274 r_nbd_refined 0.232 r_symmetry_nbd_other 0.207 r_xyhbond_nbd_refined 0.201 r_nbtor_refined 0.195 r_chiral_restr 0.132 r_symmetry_nbtor_other 0.093 r_bond_refined_d 0.02 r_gen_planes_refined 0.015 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 941 Nucleic Acid Atoms Solvent Atoms 100 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing