7QNJ

CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT F254I COMPLEXED WITH FE, NAD+, AND GLYCEROL

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1RRM

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	4.5	295.15	75.09mM Sodium acetate trihydrate, pH 4.5, 15%w/v PEG 3350, 225mM NAF

Crystal Properties
Matthews coefficient	Solvent content
2.24	45.09

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 58.139	α = 90
b = 86.217	β = 90
c = 148.474	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X 16M		2019-10-12	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.9763	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.66	29.43	99.8	0.033	0.999	14.5	6.73		88890			12.82

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.66	1.69	97.1		0.303	0.847	2.5	5.85

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1RRM	1.66	29.427	88804	4492	99.821	0.156	0.1543	0.1833	18.441

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.825			-0.947		1.772

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.057
r_dihedral_angle_4_deg	17.386
r_dihedral_angle_3_deg	11.778
r_dihedral_angle_1_deg	6.4
r_lrange_it	4.519
r_lrange_other	4.366
r_scangle_it	2.409
r_scangle_other	2.409
r_scbond_it	1.503
r_scbond_other	1.503
r_mcangle_it	1.415
r_mcangle_other	1.415
r_angle_other_deg	1.37
r_angle_refined_deg	1.28
r_mcbond_it	0.888
r_mcbond_other	0.887
r_nbd_refined	0.209
r_xyhbond_nbd_other	0.208
r_symmetry_xyhbond_nbd_refined	0.184
r_symmetry_nbd_refined	0.171
r_symmetry_nbd_other	0.169
r_nbd_other	0.169
r_nbtor_refined	0.156
r_xyhbond_nbd_refined	0.128
r_symmetry_nbtor_other	0.074
r_chiral_restr	0.067
r_bond_refined_d	0.005
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5702
Nucleic Acid Atoms
Solvent Atoms	610
Heterogen Atoms	144

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
REFMAC	phasing