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Crystal structure of the SeMet octameric C-terminal Big_2-CBM56 domains from Paenibacillus illinoisensis (Bacillus circulans IAM1165) beta-1,3-glucanase H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 Protein concentration 30.0 mg/ml,
0.1 M Magnesium Chloride hexahydrate,
0.1 M HEPES pH 7.5,
PEG 400
with 30% glycerol added to crystallisation buffer for cryocooling.
Crystal Properties Matthews coefficient Solvent content 2.56 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 201.125 α = 90 b = 51.716 β = 92.494 c = 168.659 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97918 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 48.772 99.5 0.336 0.429 0.265 0.982 4.3 4.5 94220
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.19 3.802 4.967 3.161 0.163 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2.156 48.771 94185 4797 99.747 0.242 0.2397 0.2924 0.26 26.918
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 -0.732 -0.491 -0.433
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.034 r_dihedral_angle_3_deg 16.483 r_dihedral_angle_1_deg 8.66 r_lrange_it 4.042 r_lrange_other 3.974 r_angle_refined_deg 1.766 r_mcangle_it 1.465 r_mcangle_other 1.465 r_scangle_it 1.451 r_scangle_other 1.451
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.034 r_dihedral_angle_3_deg 16.483 r_dihedral_angle_1_deg 8.66 r_lrange_it 4.042 r_lrange_other 3.974 r_angle_refined_deg 1.766 r_mcangle_it 1.465 r_mcangle_other 1.465 r_scangle_it 1.451 r_scangle_other 1.451 r_angle_other_deg 1.27 r_scbond_it 0.874 r_scbond_other 0.874 r_mcbond_it 0.814 r_mcbond_other 0.814 r_nbd_other 0.253 r_symmetry_xyhbond_nbd_refined 0.205 r_symmetry_nbd_refined 0.196 r_nbd_refined 0.189 r_symmetry_nbd_other 0.186 r_xyhbond_nbd_refined 0.178 r_nbtor_refined 0.162 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.069 r_symmetry_xyhbond_nbd_other 0.044 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10726 Nucleic Acid Atoms Solvent Atoms 796 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data scaling CRANK2 phasing MOLREP phasing XDS data reduction