7QWO

ATAD2 in complex with FragLite6

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3DAI

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6.5	293	0.1M BisTris pH 6-7, 1.7-2.1M Ammonium sulphate

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 79.777	α = 90
b = 79.777	β = 90
c = 135.692	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-07-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.976	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.5	69.09	100	0.136	0.143	0.044	0.999	10	19		41617

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.5	1.53			36.608	17.109	0.373		9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3DAI	1.5	61.644	41542	2074	99.933	0.241	0.2392	0.2725	41.941

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.488	-0.744		-1.488		4.826

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.013
r_lrange_it	25.33
r_lrange_other	25.321
r_dihedral_angle_3_deg	14.19
r_dihedral_angle_4_deg	13.158
r_scangle_other	8.105
r_scangle_it	8.098
r_mcangle_other	5.55
r_mcangle_it	5.547
r_dihedral_angle_1_deg	5.44
r_scbond_it	5.279
r_scbond_other	5.272
r_mcbond_it	4.018
r_mcbond_other	4.007
r_angle_refined_deg	1.686
r_angle_other_deg	1.387
r_symmetry_nbd_refined	0.878
r_nbd_other	0.45
r_symmetry_xyhbond_nbd_refined	0.273
r_nbd_refined	0.235
r_xyhbond_nbd_refined	0.203
r_symmetry_nbd_other	0.191
r_nbtor_refined	0.173
r_chiral_restr	0.088
r_symmetry_nbtor_other	0.083
r_xyhbond_nbd_other	0.031
r_bond_refined_d	0.011
r_gen_planes_refined	0.008
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1084
Nucleic Acid Atoms
Solvent Atoms	138
Heterogen Atoms	47

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
Aimless	data scaling
xia2	data reduction
xia2	data scaling
PHASER	phasing