7QX1

ATAD2 in complex with FragLite7

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3DAI

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	293	0.1M BisTris pH 6-7, 1.7-2.1M Ammonium sulphate

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 79.599	α = 90
b = 79.599	β = 90
c = 137.348	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-07-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.979	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.49	68.93	100	0.068	0.072	0.022	1	19	18.8		42789

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.49	1.52			2.505	2.815	1.247	0.546		8.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3DAI	1.49	68.93	42712	2188	99.932	0.207	0.2046	0.2424	34.025

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.685	-0.342		-0.685		2.221

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.983
r_lrange_it	16.628
r_lrange_other	16.622
r_dihedral_angle_3_deg	13.259
r_dihedral_angle_4_deg	12.019
r_scangle_other	11.265
r_scangle_it	11.235
r_scbond_other	7.944
r_scbond_it	7.926
r_dihedral_angle_1_deg	4.796
r_mcangle_other	3.982
r_mcangle_it	3.979
r_mcbond_it	2.899
r_mcbond_other	2.894
r_angle_refined_deg	1.941
r_angle_other_deg	1.51
r_symmetry_nbd_refined	0.34
r_nbd_other	0.283
r_symmetry_xyhbond_nbd_refined	0.265
r_nbd_refined	0.224
r_xyhbond_nbd_refined	0.207
r_symmetry_nbd_other	0.183
r_nbtor_refined	0.178
r_xyhbond_nbd_other	0.104
r_chiral_restr	0.096
r_symmetry_nbtor_other	0.082
r_bond_refined_d	0.014
r_gen_planes_refined	0.01
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1084
Nucleic Acid Atoms
Solvent Atoms	161
Heterogen Atoms	47

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
Aimless	data scaling
xia2	data reduction
xia2	data scaling
PHASER	phasing