☰ Navigation Tabs
The complex structure of beta-1,2-glucosyltransferase from Ignavibacterium album with ethyl alpha-D-Glucoside
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.1M Tris-HCl (pH 7.5), 0.2M calcium acetate, 20%(w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.18 43.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 164.753 α = 90 b = 71.517 β = 105.131 c = 129.94 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2017-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 47.84 100 0.094 9.2 3.8 135219
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 100 0.586 2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.8 43.978 135217 6793 99.992 0.173 0.1717 0.2036 0.1876 18.185
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.002 -0.001 -0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.376 r_dihedral_angle_4_deg 20.705 r_dihedral_angle_3_deg 14.416 r_dihedral_angle_1_deg 7.008 r_lrange_it 4.629 r_lrange_other 4.629 r_scangle_it 3.641 r_scangle_other 3.641 r_scbond_it 2.307 r_scbond_other 2.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.376 r_dihedral_angle_4_deg 20.705 r_dihedral_angle_3_deg 14.416 r_dihedral_angle_1_deg 7.008 r_lrange_it 4.629 r_lrange_other 4.629 r_scangle_it 3.641 r_scangle_other 3.641 r_scbond_it 2.307 r_scbond_other 2.307 r_mcangle_it 2.289 r_mcangle_other 2.289 r_angle_refined_deg 1.572 r_mcbond_it 1.519 r_mcbond_other 1.518 r_angle_other_deg 1.389 r_nbd_refined 0.207 r_nbd_other 0.204 r_symmetry_nbd_refined 0.197 r_symmetry_nbd_other 0.181 r_nbtor_refined 0.178 r_symmetry_xyhbond_nbd_refined 0.168 r_xyhbond_nbd_refined 0.133 r_symmetry_metal_ion_refined 0.133 r_chiral_restr 0.08 r_symmetry_nbtor_other 0.08 r_metal_ion_refined 0.069 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11642 Nucleic Acid Atoms Solvent Atoms 769 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing