Experiment: 7XBE

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		289	0.1 M Sodium acetate, pH 4.6, 25 % (w/v) PEG 3000

Crystal Properties
Matthews coefficient	Solvent content
1.43	13.96

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 101.935	α = 90
b = 38.799	β = 118.01
c = 54.504	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2016-03-17	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL17U	0.9735	SSRF	BL17U

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.65	50	98.4	0.095	0.115	0.064	7.8	3.3		22631

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.65	1.68	97.1		0.498	0.6	0.331	0.812		3.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	5ZZO	1.65	30	21396	1119	98.37	0.1904	0.1886	0.2234	RANDOM	33.795

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-3.1		-0.65	1.39		1.53

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	40.415
r_sphericity_free	24.364
r_dihedral_angle_4_deg	12.038
r_dihedral_angle_3_deg	10.765
r_dihedral_angle_1_deg	5.61
r_sphericity_bonded	4.002
r_angle_refined_deg	1.343
r_angle_other_deg	0.866
r_rigid_bond_restr	0.773
r_chiral_restr	0.193

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	40.415
r_sphericity_free	24.364
r_dihedral_angle_4_deg	12.038
r_dihedral_angle_3_deg	10.765
r_dihedral_angle_1_deg	5.61
r_sphericity_bonded	4.002
r_angle_refined_deg	1.343
r_angle_other_deg	0.866
r_rigid_bond_restr	0.773
r_chiral_restr	0.193
r_bond_refined_d	0.006
r_gen_planes_refined	0.004
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1591
Nucleic Acid Atoms
Solvent Atoms	81
Heterogen Atoms	15

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-3000	phasing

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.