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Acetylesterase (LgEstI) W.T.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model ITasser
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 0.1M Tris-HCl, pH 7.0, 0.2M calcium acetate hydrate, 20% (w/v) PEG 3000
Crystal Properties Matthews coefficient Solvent content 2.51 50.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.41 α = 90 b = 92.77 β = 96.615 c = 218.111 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2021-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.97949 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 28.49 98.7 0.999 16.1 6.9 71847
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.04 0.54 0.961
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE model 2 28.49 71845 3591 98.718 0.194 0.1917 0.2 0.2349 0.242 40.693
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.012 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.683 r_dihedral_angle_3_deg 15.459 r_dihedral_angle_4_deg 14.971 r_dihedral_angle_1_deg 7.172 r_lrange_it 6.561 r_lrange_other 6.538 r_scangle_it 5.435 r_scangle_other 5.435 r_mcangle_it 4.001 r_mcangle_other 4.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.683 r_dihedral_angle_3_deg 15.459 r_dihedral_angle_4_deg 14.971 r_dihedral_angle_1_deg 7.172 r_lrange_it 6.561 r_lrange_other 6.538 r_scangle_it 5.435 r_scangle_other 5.435 r_mcangle_it 4.001 r_mcangle_other 4.001 r_scbond_it 3.642 r_scbond_other 3.642 r_mcbond_it 2.988 r_mcbond_other 2.988 r_angle_refined_deg 1.565 r_angle_other_deg 1.319 r_symmetry_nbd_refined 0.383 r_nbd_other 0.236 r_nbd_refined 0.204 r_symmetry_xyhbond_nbd_other 0.184 r_symmetry_nbd_other 0.183 r_nbtor_refined 0.162 r_xyhbond_nbd_refined 0.157 r_symmetry_xyhbond_nbd_refined 0.116 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7572 Nucleic Acid Atoms Solvent Atoms 496 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing