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Acetylesterase (LgEstI) F207A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7YC0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2M Potassium Formate, pH 7.3, 20% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.32 46.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.2 α = 90 b = 127.39 β = 90.173 c = 104.76 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2021-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 29.365 99.9 0.997 10.7 6.7 151387
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 0.712
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 7YC0 2.1 29.365 151386 7581 99.887 0.195 0.1919 0.1981 0.2451 0.2485 36.435
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.015 0.001 0.01 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.714 r_dihedral_angle_4_deg 18.89 r_dihedral_angle_3_deg 15.884 r_dihedral_angle_1_deg 7.41 r_lrange_it 5.732 r_lrange_other 5.726 r_scangle_it 4.584 r_scangle_other 4.584 r_mcangle_other 3.606 r_mcangle_it 3.605
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.714 r_dihedral_angle_4_deg 18.89 r_dihedral_angle_3_deg 15.884 r_dihedral_angle_1_deg 7.41 r_lrange_it 5.732 r_lrange_other 5.726 r_scangle_it 4.584 r_scangle_other 4.584 r_mcangle_other 3.606 r_mcangle_it 3.605 r_scbond_other 3.051 r_scbond_it 3.05 r_mcbond_it 2.657 r_mcbond_other 2.657 r_angle_refined_deg 1.538 r_angle_other_deg 1.281 r_nbd_other 0.253 r_symmetry_nbd_refined 0.242 r_nbd_refined 0.199 r_symmetry_nbd_other 0.178 r_nbtor_refined 0.16 r_xyhbond_nbd_refined 0.159 r_symmetry_xyhbond_nbd_refined 0.147 r_symmetry_xyhbond_nbd_other 0.097 r_symmetry_nbtor_other 0.075 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20140 Nucleic Acid Atoms Solvent Atoms 577 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing