X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.001M ZnSulfate heptahydrate; 0.05M HEPES 7.8; 28% PEG600
Crystal Properties
Matthews coefficientSolvent content
3.4964.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.645α = 90
b = 94.036β = 110.069
c = 61.305γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2021-04-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 21.281493SOLEILPROXIMA 2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.749.1199.80.2470.2710.110.9745.95.917246
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.831000.7680.8480.3540.6755.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTunpublished2.749.111631989499.670.215960.213760.25696RANDOM41.168
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.751.172.11-0.96
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.665
r_dihedral_angle_4_deg18.26
r_dihedral_angle_3_deg13.366
r_long_range_B_refined10.99
r_long_range_B_other10.979
r_scangle_other10.053
r_scbond_it7.977
r_scbond_other7.975
r_dihedral_angle_1_deg5.712
r_mcangle_other5.702
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.665
r_dihedral_angle_4_deg18.26
r_dihedral_angle_3_deg13.366
r_long_range_B_refined10.99
r_long_range_B_other10.979
r_scangle_other10.053
r_scbond_it7.977
r_scbond_other7.975
r_dihedral_angle_1_deg5.712
r_mcangle_other5.702
r_mcangle_it5.696
r_mcbond_it4.1
r_mcbond_other4.081
r_angle_refined_deg1.002
r_angle_other_deg0.899
r_chiral_restr0.057
r_bond_refined_d0.005
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3184
Nucleic Acid Atoms
Solvent Atoms109
Heterogen Atoms92

Software

Software
Software NamePurpose
PDB-REDOrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing