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Salmonella enterica Rhs1 C-terminal toxin TreTu complex with TriTu immunity protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other unpublished
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.001M ZnSulfate heptahydrate; 0.05M HEPES 7.8; 28% PEG600
Crystal Properties Matthews coefficient Solvent content 3.49 64.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.645 α = 90 b = 94.036 β = 110.069 c = 61.305 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2021-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 1.281493 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 49.11 99.8 0.247 0.271 0.11 0.974 5.9 5.9 17246
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.83 100 0.768 0.848 0.354 0.675 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT unpublished 2.7 49.11 16319 894 99.67 0.21596 0.21376 0.2189 0.25696 0.2592 RANDOM 41.168
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.75 1.17 2.11 -0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.665 r_dihedral_angle_4_deg 18.26 r_dihedral_angle_3_deg 13.366 r_long_range_B_refined 10.99 r_long_range_B_other 10.979 r_scangle_other 10.053 r_scbond_it 7.977 r_scbond_other 7.975 r_dihedral_angle_1_deg 5.712 r_mcangle_other 5.702
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.665 r_dihedral_angle_4_deg 18.26 r_dihedral_angle_3_deg 13.366 r_long_range_B_refined 10.99 r_long_range_B_other 10.979 r_scangle_other 10.053 r_scbond_it 7.977 r_scbond_other 7.975 r_dihedral_angle_1_deg 5.712 r_mcangle_other 5.702 r_mcangle_it 5.696 r_mcbond_it 4.1 r_mcbond_other 4.081 r_angle_refined_deg 1.002 r_angle_other_deg 0.899 r_chiral_restr 0.057 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3184 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 92
Software Software Software Name Purpose PDB-REDO refinement XDS data reduction Aimless data scaling PHASER phasing