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small molecule stabilizer for ERalpha and 14-3-3 (1083743)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JC3 4JC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.095 M HEPES (pH 7.1), PEG400 (26% (v/v)), 0.19 M CaCl2 and 5% (v/v) Glycerol
Crystal Properties Matthews coefficient Solvent content 2.68 54.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.249 α = 90 b = 112.428 β = 90 c = 62.645 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2022-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873128 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 41.84 100 0.991 25.1 12.8 57400
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 0.967
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JC3 1.4 41.16 54443 2917 99.91 0.16184 0.16082 0.1609 0.18083 0.1809 RANDOM 12.251
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.093 r_dihedral_angle_4_deg 15.375 r_dihedral_angle_3_deg 10.856 r_long_range_B_refined 5.448 r_long_range_B_other 5.165 r_scangle_other 4.402 r_dihedral_angle_1_deg 4.38 r_scbond_it 3.081 r_scbond_other 3.079 r_angle_other_deg 2.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.093 r_dihedral_angle_4_deg 15.375 r_dihedral_angle_3_deg 10.856 r_long_range_B_refined 5.448 r_long_range_B_other 5.165 r_scangle_other 4.402 r_dihedral_angle_1_deg 4.38 r_scbond_it 3.081 r_scbond_other 3.079 r_angle_other_deg 2.103 r_mcangle_it 1.973 r_mcangle_other 1.972 r_angle_refined_deg 1.859 r_mcbond_it 1.4 r_mcbond_other 1.4 r_chiral_restr 0.096 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1898 Nucleic Acid Atoms Solvent Atoms 350 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DIALS data reduction Aimless data scaling MOLREP phasing