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Small molecular stabilizer for C-RAF (pS259) and 14-3-3 (1075306)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQU 3iqu
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES (pH 7.1), PEG400 (24% (v/v)), 0.19 M CaCl2 and 5% (v/v) Glycerol
Crystal Properties Matthews coefficient Solvent content 2.6 52.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.627 α = 90 b = 112.368 β = 90 c = 62.575 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.033220 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 45.46 99.8 1 25.2 1.9 56825
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 0.889
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3iqu 1.4 45.46 53923 2902 99.78 0.14819 0.14693 0.1462 0.1706 0.1722 RANDOM 22.614
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.87 -0.86 -1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.814 r_dihedral_angle_4_deg 13.026 r_dihedral_angle_3_deg 11.402 r_dihedral_angle_1_deg 4.508 r_long_range_B_refined 3.802 r_long_range_B_other 3.708 r_scangle_other 3.384 r_mcangle_other 2.594 r_mcangle_it 2.593 r_scbond_it 2.573
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.814 r_dihedral_angle_4_deg 13.026 r_dihedral_angle_3_deg 11.402 r_dihedral_angle_1_deg 4.508 r_long_range_B_refined 3.802 r_long_range_B_other 3.708 r_scangle_other 3.384 r_mcangle_other 2.594 r_mcangle_it 2.593 r_scbond_it 2.573 r_scbond_other 2.571 r_mcbond_it 1.866 r_mcbond_other 1.854 r_rigid_bond_restr 1.501 r_angle_refined_deg 1.322 r_angle_other_deg 1.26 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1930 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing