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Small molecule stabilizer for ERalpha and 14-3-3 (1080298)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JC3 4JC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES (pH 7.1), PEG400 (24 (v/v)), 0.19 M CaCl2 and 5% (v/v) Glycerol
Crystal Properties Matthews coefficient Solvent content 2.65 53.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.971 α = 90 b = 112.406 β = 90 c = 62.344 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.976254 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 66.23 96.3 0.928 9.7 3.1 44445
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 0.404
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JC3 1.5 66.23 42143 2250 95.6 0.19834 0.19684 0.1992 0.22674 0.2289 RANDOM 15.597
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.721 r_dihedral_angle_4_deg 13.337 r_dihedral_angle_3_deg 10.967 r_long_range_B_refined 5.521 r_long_range_B_other 5.325 r_scangle_other 4.351 r_dihedral_angle_1_deg 4.304 r_scbond_it 2.929 r_scbond_other 2.928 r_mcangle_it 2.399
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.721 r_dihedral_angle_4_deg 13.337 r_dihedral_angle_3_deg 10.967 r_long_range_B_refined 5.521 r_long_range_B_other 5.325 r_scangle_other 4.351 r_dihedral_angle_1_deg 4.304 r_scbond_it 2.929 r_scbond_other 2.928 r_mcangle_it 2.399 r_mcangle_other 2.399 r_mcbond_it 1.616 r_mcbond_other 1.614 r_angle_other_deg 1.13 r_angle_refined_deg 1.07 r_chiral_restr 0.069 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1899 Nucleic Acid Atoms Solvent Atoms 331 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DIALS data reduction Aimless data scaling MOLREP phasing