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Small molecular stabilizer for ERalpha and 14-3-3 (1080299)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JC3 4JC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES (pH 7.3), PEG400 (24% (v/v)), 0.19 M CaCl2 and 5% (v/v) Glycerol
Crystal Properties Matthews coefficient Solvent content 2.66 53.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.11 α = 90 b = 112.675 β = 90 c = 62.456 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.976254 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 45.52 96.5 0.994 16.3 3.3 54927
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 0.967
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JC3 1.4 45.52 52133 2772 95.87 0.13309 0.13165 0.13 0.16039 0.159 RANDOM 13.428
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.83 1.51 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.229 r_dihedral_angle_4_deg 18.29 r_dihedral_angle_3_deg 10.34 r_dihedral_angle_1_deg 4.486 r_rigid_bond_restr 3.337 r_long_range_B_refined 3.065 r_long_range_B_other 2.68 r_scangle_other 2.133 r_angle_refined_deg 1.792 r_scbond_it 1.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.229 r_dihedral_angle_4_deg 18.29 r_dihedral_angle_3_deg 10.34 r_dihedral_angle_1_deg 4.486 r_rigid_bond_restr 3.337 r_long_range_B_refined 3.065 r_long_range_B_other 2.68 r_scangle_other 2.133 r_angle_refined_deg 1.792 r_scbond_it 1.69 r_scbond_other 1.69 r_mcangle_it 1.538 r_mcangle_other 1.537 r_angle_other_deg 1.321 r_mcbond_it 1.141 r_mcbond_other 1.141 r_chiral_restr 0.303 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1899 Nucleic Acid Atoms Solvent Atoms 351 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing