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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH (R)-7-((R)-1,2-dihydroxyethyl)-1,3-dimethyl-5-(1-methyl-1H-pyrazol-4-yl)-1,3-dihydro-2H-benzo[d]azepin-2-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other in house
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.25 45.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.829 α = 90 b = 52.503 β = 90 c = 32.04 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2015-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 32.06 96.7 0.0204 0.999 42.1 5.2 15964
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 79.9 0.075 0.978 14 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE in house 1.603 32.06 15915 768 96.338 0.159 0.1574 0.1721 0.1793 0.1899 19.452
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.213 0.344
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.663 r_dihedral_angle_4_deg 23.719 r_dihedral_angle_3_deg 12.816 r_lrange_it 5.391 r_lrange_other 5.389 r_dihedral_angle_1_deg 4.528 r_scangle_it 2.737 r_scangle_other 2.736 r_mcangle_it 1.808 r_mcangle_other 1.808
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.663 r_dihedral_angle_4_deg 23.719 r_dihedral_angle_3_deg 12.816 r_lrange_it 5.391 r_lrange_other 5.389 r_dihedral_angle_1_deg 4.528 r_scangle_it 2.737 r_scangle_other 2.736 r_mcangle_it 1.808 r_mcangle_other 1.808 r_scbond_it 1.622 r_scbond_other 1.621 r_angle_other_deg 1.252 r_angle_refined_deg 1.166 r_mcbond_it 1.066 r_mcbond_other 1.063 r_nbd_refined 0.199 r_nbd_other 0.165 r_nbtor_refined 0.164 r_symmetry_nbd_other 0.161 r_symmetry_nbd_refined 0.115 r_xyhbond_nbd_refined 0.094 r_symmetry_xyhbond_nbd_refined 0.08 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.062 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 923 Nucleic Acid Atoms Solvent Atoms 229 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling