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COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Other in house model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1M citrate buffer pH 4.5 and 20-30% PEG4000
Crystal Properties Matthews coefficient Solvent content 2.2 44.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.12 α = 90 b = 59.634 β = 90 c = 67.053 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2009-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 44.561 99.4 0.049 1 23.09 7.9 65835
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.28 0.825 0.824 2.75
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT in house model 1.25 44.561 65835 888 99.413 0.116 0.1161 0.1192 0.1407 0.1492 20.377
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.257 -1.511 0.254
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.063 r_dihedral_angle_4_deg 18.861 r_dihedral_angle_3_deg 11.419 r_dihedral_angle_1_deg 6.835 r_lrange_it 4.523 r_lrange_other 4.353 r_scangle_it 4.063 r_scangle_other 4.062 r_scbond_it 3.359 r_scbond_other 3.358
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.063 r_dihedral_angle_4_deg 18.861 r_dihedral_angle_3_deg 11.419 r_dihedral_angle_1_deg 6.835 r_lrange_it 4.523 r_lrange_other 4.353 r_scangle_it 4.063 r_scangle_other 4.062 r_scbond_it 3.359 r_scbond_other 3.358 r_rigid_bond_restr 2.551 r_mcangle_other 2.405 r_mcangle_it 2.4 r_mcbond_it 1.886 r_mcbond_other 1.874 r_angle_refined_deg 1.661 r_angle_other_deg 1.483 r_symmetry_nbd_refined 0.285 r_nbd_other 0.213 r_nbd_refined 0.197 r_symmetry_nbd_other 0.191 r_nbtor_refined 0.172 r_xyhbond_nbd_refined 0.142 r_symmetry_xyhbond_nbd_refined 0.132 r_chiral_restr 0.089 r_symmetry_nbtor_other 0.083 r_chiral_restr_other 0.039 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1880 Nucleic Acid Atoms Solvent Atoms 227 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing