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The Fk1 domain of FKBP51 in complex with (2R,5S,12S)-12-(thiophen-2-yl)-2-[2-(3,4-dimethoxyphenyl)ethyl]-15,15-dimethyl-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0^5,^10]tetracosa-1(24),20,22-triene-4,11,14,17-tetrone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 32% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammonium acetate
Crystal Properties Matthews coefficient Solvent content 2.4 48.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.821 α = 90 b = 48.073 β = 90 c = 58.549 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 48.07 99.9 0.034 0.041 0.022 1 18 6.3 33862
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 1.519 1.801 0.955 0.678 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4TW7 1.3 33.926 33806 1751 99.82 0.168 0.1665 0.1654 0.1998 0.1963 19.858
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.484 0.122 2.362
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 18.621 r_dihedral_angle_3_deg 11.724 r_dihedral_angle_1_deg 8.005 r_dihedral_angle_2_deg 4.265 r_rigid_bond_restr 4.233 r_lrange_it 3.519 r_lrange_other 3.234 r_scangle_it 2.541 r_scangle_other 2.54 r_mcangle_it 2.355
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 18.621 r_dihedral_angle_3_deg 11.724 r_dihedral_angle_1_deg 8.005 r_dihedral_angle_2_deg 4.265 r_rigid_bond_restr 4.233 r_lrange_it 3.519 r_lrange_other 3.234 r_scangle_it 2.541 r_scangle_other 2.54 r_mcangle_it 2.355 r_mcangle_other 2.354 r_scbond_it 1.912 r_scbond_other 1.91 r_mcbond_it 1.892 r_mcbond_other 1.891 r_angle_refined_deg 1.877 r_chiral_restr_other 1.023 r_angle_other_deg 0.709 r_nbd_refined 0.222 r_symmetry_nbd_other 0.191 r_nbtor_refined 0.175 r_nbd_other 0.163 r_xyhbond_nbd_refined 0.134 r_symmetry_xyhbond_nbd_refined 0.126 r_symmetry_nbd_refined 0.108 r_symmetry_nbtor_other 0.087 r_chiral_restr 0.085 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 942 Nucleic Acid Atoms Solvent Atoms 160 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing