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Crystal structure of Arabidopsis thaliana COSY
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4G0B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298.15 50 mM calcium acetate, 0.1 M sodium cacodylate pH 6.5, 20% glycerol
Crystal Properties Matthews coefficient Solvent content 2.26 45.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.411 α = 90 b = 57.903 β = 90 c = 270.395 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2017-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9791 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 48.72 98.65 1 13.42 1.1 71357
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.968 89.64 1 1.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4G0B 1.9 48.76 67704 3653 98.51 0.1916 0.1896 0.199 0.23017 0.2357 RANDOM 32.958
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.74 -0.52 1.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.175 r_dihedral_angle_4_deg 17.835 r_dihedral_angle_3_deg 14.345 r_dihedral_angle_1_deg 6.645 r_long_range_B_refined 4.892 r_long_range_B_other 4.892 r_scangle_other 1.742 r_mcangle_it 1.5 r_mcangle_other 1.5 r_angle_refined_deg 1.326
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.175 r_dihedral_angle_4_deg 17.835 r_dihedral_angle_3_deg 14.345 r_dihedral_angle_1_deg 6.645 r_long_range_B_refined 4.892 r_long_range_B_other 4.892 r_scangle_other 1.742 r_mcangle_it 1.5 r_mcangle_other 1.5 r_angle_refined_deg 1.326 r_scbond_it 1.091 r_scbond_other 1.088 r_angle_other_deg 0.951 r_mcbond_it 0.884 r_mcbond_other 0.884 r_chiral_restr 0.066 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6806 Nucleic Acid Atoms Solvent Atoms 351 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing