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Lysozyme Anomalous Dataset at 293 K and 7.1 keV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 298 5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
Crystal Properties Matthews coefficient Solvent content 1.96 37.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.706 α = 90 b = 77.706 β = 90 c = 37.121 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL DECTRIS EIGER X 16M 2020-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 1.7462 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 38.883 92.9 0.033 0.022 0.997 30.7 5.6 8682 25.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 78.8 0.119 0.084 0.984 9.9 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.9 38.883 8682 457 92.293 0.132 0.1297 0.1664 0.1889 22.922
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.143 0.143 -0.286
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.262 r_dihedral_angle_3_deg 15.047 r_dihedral_angle_2_deg 8.441 r_lrange_it 7.882 r_lrange_other 7.869 r_dihedral_angle_1_deg 6.676 r_scangle_it 5.886 r_scangle_other 5.883 r_scbond_it 3.96 r_scbond_other 3.958
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.262 r_dihedral_angle_3_deg 15.047 r_dihedral_angle_2_deg 8.441 r_lrange_it 7.882 r_lrange_other 7.869 r_dihedral_angle_1_deg 6.676 r_scangle_it 5.886 r_scangle_other 5.883 r_scbond_it 3.96 r_scbond_other 3.958 r_mcangle_other 3.022 r_mcangle_it 3.017 r_mcbond_it 2.213 r_mcbond_other 2.213 r_angle_refined_deg 1.565 r_angle_other_deg 0.543 r_xyhbond_nbd_refined 0.403 r_symmetry_xyhbond_nbd_other 0.36 r_nbd_refined 0.239 r_symmetry_nbd_other 0.204 r_symmetry_xyhbond_nbd_refined 0.185 r_nbtor_refined 0.181 r_nbd_other 0.18 r_metal_ion_refined 0.108 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.078 r_symmetry_nbd_refined 0.074 r_gen_planes_refined 0.009 r_bond_refined_d 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXDE phasing