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Thaumatin Anomalous Dataset at 293 K and 7.1 keV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.6 298 5 uL 24% potassium/sodium phosphate, 15% ethylene glycol, 0.1 M Bis-Tris, pH 6.6 + 5 uL 20mg/mL thaumatin in distilled water
Crystal Properties Matthews coefficient Solvent content 2.95 0.563
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.96 α = 90 b = 58.96 β = 90 c = 151.243 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL DECTRIS EIGER X 16M 2020-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 1.7462 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 38.346 99.5 0.046 0.019 0.999 20.6 7.3 25629 30.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 93.8 0.481 0.044 0.742 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.8 38.346 25489 1266 99.427 0.142 0.1406 0.1531 0.1607 0.1745 29.795
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 0.51 -1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.977 r_dihedral_angle_6_deg 16.784 r_dihedral_angle_3_deg 13.812 r_lrange_it 10.016 r_lrange_other 9.927 r_scangle_other 7.619 r_scangle_it 7.613 r_dihedral_angle_1_deg 7.21 r_scbond_it 5.377 r_scbond_other 5.372
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.977 r_dihedral_angle_6_deg 16.784 r_dihedral_angle_3_deg 13.812 r_lrange_it 10.016 r_lrange_other 9.927 r_scangle_other 7.619 r_scangle_it 7.613 r_dihedral_angle_1_deg 7.21 r_scbond_it 5.377 r_scbond_other 5.372 r_mcangle_other 4.216 r_mcangle_it 4.204 r_mcbond_other 3.162 r_mcbond_it 3.159 r_angle_refined_deg 1.423 r_angle_other_deg 0.519 r_xyhbond_nbd_refined 0.306 r_nbd_refined 0.245 r_symmetry_xyhbond_nbd_refined 0.235 r_symmetry_nbd_other 0.211 r_nbtor_refined 0.187 r_nbd_other 0.149 r_symmetry_nbd_refined 0.119 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.077 r_symmetry_xyhbond_nbd_other 0.077 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1552 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXCD phasing