☰ Navigation Tabs
Thaumatin Anomalous Dataset at 293 K and 12 keV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.6 293 5 uL 24% potassium/sodium phosphate, 15% ethylene glycol, 0.1 M Bis-Tris, pH 6.6 + 5 uL 20mg/mL thaumatin in distilled water
Crystal Properties Matthews coefficient Solvent content 2.95 56.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.937 α = 90 b = 58.937 β = 90 c = 151.298 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL DECTRIS EIGER X 16M 2020-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 1.0332 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.39 38.323 99.8 0.093 0.013 1 29.7 52.4 54660 27.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.39 1.41 98.7 5.181 0.713 0.686 1.3 52.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.39 38.323 54505 2737 99.769 0.113 0.1113 0.1247 0.1374 0.1486 22.772
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.145 0.145 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.08 r_dihedral_angle_3_deg 13.643 r_dihedral_angle_2_deg 9.51 r_dihedral_angle_1_deg 7 r_scbond_other 5.716 r_scbond_it 5.715 r_lrange_it 5.362 r_scangle_it 5.33 r_scangle_other 5.33 r_rigid_bond_restr 5.231
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.08 r_dihedral_angle_3_deg 13.643 r_dihedral_angle_2_deg 9.51 r_dihedral_angle_1_deg 7 r_scbond_other 5.716 r_scbond_it 5.715 r_lrange_it 5.362 r_scangle_it 5.33 r_scangle_other 5.33 r_rigid_bond_restr 5.231 r_lrange_other 4.552 r_mcangle_it 2.8 r_mcangle_other 2.8 r_mcbond_other 2.539 r_mcbond_it 2.536 r_angle_refined_deg 1.618 r_angle_other_deg 0.628 r_symmetry_xyhbond_nbd_refined 0.377 r_xyhbond_nbd_refined 0.324 r_nbd_refined 0.249 r_symmetry_nbd_other 0.216 r_nbtor_refined 0.191 r_metal_ion_refined 0.175 r_nbd_other 0.154 r_symmetry_nbd_refined 0.126 r_chiral_restr 0.096 r_symmetry_nbtor_other 0.09 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1552 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXDE phasing