☰ Navigation Tabs
Inactive mutant of CtPL-H210S/F214I/N181A/F235L
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7CWQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.8 M lithium chloride, 5% PEG 6000, 0.1 M citric acid (pH 4.0)
Crystal Properties Matthews coefficient Solvent content 1.84 33.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.789 α = 90 b = 62.405 β = 90 c = 157.247 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Bruker PHOTON III 2022-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 LIQUID ANODE BRUKER METALJET 1.34138
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 33.63 98.7 0.0823 14.69 6.46 16729
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 1.95 95.3 0.2673 3.98 4.61
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7CWQ 1.92 33.63 15834 848 98.43 0.19999 0.1968 0.2041 0.26188 0.266 RANDOM 21.699
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.4 1.34 1.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.01 r_dihedral_angle_4_deg 18.847 r_dihedral_angle_3_deg 16.208 r_dihedral_angle_1_deg 7.602 r_long_range_B_refined 5.311 r_long_range_B_other 5.281 r_scangle_other 3.04 r_mcangle_other 2.565 r_mcangle_it 2.564 r_scbond_it 1.928
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.01 r_dihedral_angle_4_deg 18.847 r_dihedral_angle_3_deg 16.208 r_dihedral_angle_1_deg 7.602 r_long_range_B_refined 5.311 r_long_range_B_other 5.281 r_scangle_other 3.04 r_mcangle_other 2.565 r_mcangle_it 2.564 r_scbond_it 1.928 r_scbond_other 1.927 r_mcbond_it 1.664 r_mcbond_other 1.658 r_angle_refined_deg 1.56 r_angle_other_deg 1.328 r_chiral_restr 0.069 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1960 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms
Software Software Software Name Purpose SAINT data reduction SAINT data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing