☰ Navigation Tabs
Cryo-EM structure of Euglena gracilis super-complex III2+IV2, composite
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.4957 f_angle_d 0.5445 f_chiral_restr 0.0419 f_bond_d 0.005 f_plane_restr 0.0041
Sample Euglena gracilis supercomplex III2+IV2 Sample Components Euglena gracilis supercomplex III2+IV2
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 135598 Reported Resolution (Å) 3.06 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 51.5
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 600 Maximum Defocus (nm) 1800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO 1.6.0 IMAGE ACQUISITION EPU CTF CORRECTION CTFFIND 4.1 MODEL FITTING PHENIX 1.20.1 MODEL FITTING Coot 0.9.6 INITIAL EULER ASSIGNMENT cryoSPARC v.3.3.2 FINAL EULER ASSIGNMENT cryoSPARC v.3.3.2 CLASSIFICATION cryoSPARC v.3.3.2 RECONSTRUCTION cryoSPARC v.3.3.2 MODEL REFINEMENT PHENIX 1.20.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 3232325