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Crystal structure of QR-hNTAQ1 C28S
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4W79
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295.15 0.2 M Magnesium chloride hexahydrate, 0.1 M Tris pH 8.5, and 25 % (w/v) Polyethylene glycol (PEG) 3350
Crystal Properties Matthews coefficient Solvent content 2.45 49.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.621 α = 90 b = 64.781 β = 98.361 c = 80.617 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2020-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.9794 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 99.7 0.977 12.78 4 22882
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 0.841
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.206 44.186 21786 1091 94.422 0.203 0.2021 0.2065 0.2286 0.2339 29.79
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.619 0.261 -0.591 -0.101
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.972 r_dihedral_angle_3_deg 12.063 r_dihedral_angle_4_deg 11.949 r_dihedral_angle_1_deg 6.353 r_lrange_it 3.78 r_lrange_other 3.694 r_mcangle_it 2.275 r_mcangle_other 2.275 r_scangle_it 1.951 r_scangle_other 1.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.972 r_dihedral_angle_3_deg 12.063 r_dihedral_angle_4_deg 11.949 r_dihedral_angle_1_deg 6.353 r_lrange_it 3.78 r_lrange_other 3.694 r_mcangle_it 2.275 r_mcangle_other 2.275 r_scangle_it 1.951 r_scangle_other 1.95 r_mcbond_it 1.263 r_mcbond_other 1.262 r_angle_refined_deg 1.179 r_scbond_it 1.107 r_scbond_other 1.106 r_angle_other_deg 1.07 r_nbd_refined 0.177 r_symmetry_nbd_other 0.162 r_nbtor_refined 0.162 r_nbd_other 0.15 r_xyhbond_nbd_refined 0.139 r_symmetry_nbd_refined 0.114 r_symmetry_xyhbond_nbd_refined 0.104 r_symmetry_nbtor_other 0.07 r_chiral_restr 0.04 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3292 Nucleic Acid Atoms Solvent Atoms 156 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction HKL-2000 data scaling PHASER phasing