8OG8

Crystal structure of human DCAF1 WD40 repeats (Q1250L) in complex with compound 3

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4PXW

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6.5	293	0.1M MES pH6.5, 2.13M Lithium acetate

Crystal Properties
Matthews coefficient	Solvent content
2.69	54.35

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 81.811	α = 90
b = 81.811	β = 90
c = 232.957	γ = 120

Symmetry
Space Group	P 61 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2015-08-21	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X10SA	1.000	SLS	X10SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.11	46.59	100	0.998	14.4	14.3		27598

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.11	2.17			0.718

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.11	45.031	27509	1313	99.982	0.175	0.1736	0.2125	30.084

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.06	0.03		0.06		-0.193

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.255
r_dihedral_angle_4_deg	17.308
r_dihedral_angle_3_deg	16.321
r_dihedral_angle_1_deg	7.972
r_lrange_it	6.497
r_lrange_other	6.455
r_scangle_it	4.048
r_scangle_other	4.047
r_mcangle_it	3.333
r_mcangle_other	3.333
r_scbond_it	2.564
r_scbond_other	2.563
r_angle_refined_deg	2.15
r_mcbond_other	2.018
r_mcbond_it	2.016
r_angle_other_deg	1.505
r_symmetry_nbd_other	0.201
r_xyhbond_nbd_refined	0.2
r_symmetry_xyhbond_nbd_refined	0.199
r_nbd_other	0.193
r_nbd_refined	0.19
r_nbtor_refined	0.18
r_symmetry_nbd_refined	0.109
r_chiral_restr	0.098
r_symmetry_nbtor_other	0.091
r_bond_refined_d	0.018
r_gen_planes_refined	0.013
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2387
Nucleic Acid Atoms
Solvent Atoms	173
Heterogen Atoms	54

Software

Software
Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
XDS	data reduction
PHASER	phasing