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X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(DPhF)2(O2CCH3)2] in condition A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 193L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 0.8 M succinic acid at pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.01 38.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.89 α = 90 b = 76.89 β = 90 c = 37.89 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2022-06-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.29 54.37 99.7 0.074 0.999 21.2 20.8 37185
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.29 1.31 1.14 0.763 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.29 54.336 29187 1446 99.955 0.158 0.1563 0.1656 0.1873 0.1874 18.008
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.059 -0.059 0.119
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.328 r_dihedral_angle_4_deg 23.915 r_dihedral_angle_3_deg 11.623 r_dihedral_angle_1_deg 6.626 r_lrange_it 5.661 r_lrange_other 5.179 r_scangle_it 3.468 r_scangle_other 3.466 r_scbond_other 2.248 r_scbond_it 2.247
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.328 r_dihedral_angle_4_deg 23.915 r_dihedral_angle_3_deg 11.623 r_dihedral_angle_1_deg 6.626 r_lrange_it 5.661 r_lrange_other 5.179 r_scangle_it 3.468 r_scangle_other 3.466 r_scbond_other 2.248 r_scbond_it 2.247 r_mcangle_other 2.203 r_mcangle_it 2.176 r_angle_refined_deg 1.922 r_angle_other_deg 1.642 r_mcbond_it 1.458 r_mcbond_other 1.391 r_symmetry_nbd_refined 0.272 r_xyhbond_nbd_refined 0.264 r_nbd_other 0.233 r_nbd_refined 0.227 r_nbtor_refined 0.189 r_symmetry_nbd_other 0.188 r_symmetry_xyhbond_nbd_refined 0.155 r_metal_ion_refined 0.112 r_chiral_restr 0.104 r_symmetry_nbtor_other 0.085 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 99
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling PHASER phasing