☰ Navigation Tabs
Human Carbonic Anhydrase II in complex with (3-((N-(4-sulfamoylphenethyl)phenylsulfonamido)methyl)phenyl)glycine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FIK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 296 1.5 M sodium citrate, 0.1 M Tris pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.12 41.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.54 α = 90 b = 41.52 β = 104.457 c = 72.49 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.0 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.277 41.227 89.6 0.135 0.148 0.998 17.76 5.7 57151
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.277 1.31 44 0.599 0.723 0.643 2.47 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1.277 41.227 57145 2794 89.568 0.131 0.1299 0.1296 0.1631 0.1627 12.063
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.066 -0.19 -0.18 -0.696
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.006 r_dihedral_angle_4_deg 24.721 r_dihedral_angle_3_deg 12.304 r_dihedral_angle_1_deg 6.8 r_rigid_bond_restr 6.506 r_scbond_it 4.802 r_scbond_other 4.775 r_scangle_it 4.655 r_scangle_other 4.654 r_lrange_other 4.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.006 r_dihedral_angle_4_deg 24.721 r_dihedral_angle_3_deg 12.304 r_dihedral_angle_1_deg 6.8 r_rigid_bond_restr 6.506 r_scbond_it 4.802 r_scbond_other 4.775 r_scangle_it 4.655 r_scangle_other 4.654 r_lrange_other 4.29 r_lrange_it 4.287 r_mcangle_other 3.207 r_mcangle_it 3.202 r_mcbond_it 2.462 r_mcbond_other 2.462 r_angle_refined_deg 2.054 r_angle_other_deg 1.531 r_nbd_refined 0.24 r_symmetry_nbd_other 0.195 r_symmetry_nbd_refined 0.186 r_nbd_other 0.183 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.138 r_symmetry_xyhbond_nbd_refined 0.138 r_chiral_restr 0.123 r_symmetry_nbtor_other 0.089 r_xyhbond_nbd_other 0.084 r_metal_ion_refined 0.057 r_bond_refined_d 0.017 r_gen_planes_refined 0.012 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2043 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing