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mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3J9M
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.002 f_angle_d 1.267 f_chiral_restr 0.071 f_bond_d 0.016 f_plane_restr 0.008
Sample mtLSU assembly intermediate (State 2)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details Embedding Material Ice Embedding Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 76796 Reported Resolution (Å) 2.42 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 48
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 200 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 404181