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X-ray crystallographic structure of SnoaL2 in complex with the polyketide substrate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.1 M MES pH 6.5, 0.2 M MgCl2, 25% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.18 39.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.628 α = 90 b = 62.281 β = 90 c = 89.814 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS 2M MIRRORS 2018-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87312 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 36.69 98.9 0.062 0.046 0.998 11.4 4.3 27685 1.7 18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 97.4 0.61 0.477 0.67 1.7 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 36 26280 1368 98.57 0.19368 0.19178 0.2009 0.22969 0.2388 RANDOM 32.944
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.25 -2.18 -1.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.983 r_dihedral_angle_4_deg 22.431 r_dihedral_angle_3_deg 14.751 r_long_range_B_refined 8.185 r_long_range_B_other 8.095 r_scangle_other 5.74 r_dihedral_angle_1_deg 5.175 r_scbond_it 3.773 r_scbond_other 3.772 r_mcangle_it 3.701
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.983 r_dihedral_angle_4_deg 22.431 r_dihedral_angle_3_deg 14.751 r_long_range_B_refined 8.185 r_long_range_B_other 8.095 r_scangle_other 5.74 r_dihedral_angle_1_deg 5.175 r_scbond_it 3.773 r_scbond_other 3.772 r_mcangle_it 3.701 r_mcangle_other 3.7 r_mcbond_it 2.565 r_mcbond_other 2.556 r_angle_refined_deg 1.777 r_angle_other_deg 1.094 r_chiral_restr 0.101 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2100 Nucleic Acid Atoms Solvent Atoms 257 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction MOLREP phasing