☰ Navigation Tabs
A soakable crystal form of human CDK7 in complex with AMP-PNP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 .1M (NH4)3 citrate
.2M NDSB-201
15.2% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.37 48.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.872 α = 90 b = 40.232 β = 90 c = 68.589 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2022-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.97625 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.809 72.436 91.8 0.068 13.31 5.62 24282
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.809 1.951 1.18 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.81 39.52 23054 1249 64.68 0.17757 0.17531 0.1854 0.2198 0.2236 RANDOM 50.324
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 -0.22 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.704 r_dihedral_angle_4_deg 21.723 r_dihedral_angle_3_deg 16.952 r_dihedral_angle_1_deg 16.708 r_long_range_B_refined 9.448 r_long_range_B_other 9.418 r_scbond_other 4.266 r_scbond_it 4.265 r_mcbond_it 3.105 r_mcbond_other 3.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.704 r_dihedral_angle_4_deg 21.723 r_dihedral_angle_3_deg 16.952 r_dihedral_angle_1_deg 16.708 r_long_range_B_refined 9.448 r_long_range_B_other 9.418 r_scbond_other 4.266 r_scbond_it 4.265 r_mcbond_it 3.105 r_mcbond_other 3.105 r_angle_refined_deg 1.393 r_angle_other_deg 0.477 r_chiral_restr 0.068 r_bond_refined_d 0.009 r_bond_other_d 0.001 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2260 Nucleic Acid Atoms Solvent Atoms 222 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling REFMAC phasing