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A soakable crystal form of human CDK7 in complex with AMP-PNP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 .2M Na2HPO4
20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.37 48.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.433 α = 90 b = 40.417 β = 90 c = 68.676 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.99987 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 72.22 85.5 0.173 7.8 6.3 18453
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.717 1.232
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.71 72.22 18453 995 43.88 0.2236 0.2198 0.2257 0.2939 0.2964 RANDOM 35.144
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 -1.16 0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.812 r_dihedral_angle_4_deg 19.264 r_dihedral_angle_3_deg 16.272 r_dihedral_angle_1_deg 8.99 r_angle_refined_deg 1.305 r_angle_other_deg 0.457 r_chiral_restr 0.063 r_bond_refined_d 0.01 r_bond_other_d 0.001 r_gen_planes_refined 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.812 r_dihedral_angle_4_deg 19.264 r_dihedral_angle_3_deg 16.272 r_dihedral_angle_1_deg 8.99 r_angle_refined_deg 1.305 r_angle_other_deg 0.457 r_chiral_restr 0.063 r_bond_refined_d 0.01 r_bond_other_d 0.001 r_gen_planes_refined 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2273 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling REFMAC phasing