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Galectin-3 with a small molecule inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Internal structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 1.8 M Ammonium citrate
pH 7.0
Crystal Properties Matthews coefficient Solvent content 1.98 37.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.466 α = 90 b = 57.704 β = 90 c = 62.571 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2022-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.00 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 30.2 98.4 0.145 0.998 8.9 6.5 17071
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.62 1.03 0.78 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.6 30.2 16839 847 98.583 0.229 0.2277 0.2277 0.2535 0.2535 15.903
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.171 0.074 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 10.558 r_dihedral_angle_3_deg 10.407 r_dihedral_angle_1_deg 7.035 r_lrange_it 3.56 r_dihedral_angle_2_deg 2.92 r_scangle_it 1.376 r_angle_refined_deg 1.082 r_mcangle_it 0.879 r_scbond_it 0.824 r_mcbond_it 0.522
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 10.558 r_dihedral_angle_3_deg 10.407 r_dihedral_angle_1_deg 7.035 r_lrange_it 3.56 r_dihedral_angle_2_deg 2.92 r_scangle_it 1.376 r_angle_refined_deg 1.082 r_mcangle_it 0.879 r_scbond_it 0.824 r_mcbond_it 0.522 r_nbtor_refined 0.308 r_nbd_refined 0.181 r_symmetry_nbd_refined 0.168 r_symmetry_xyhbond_nbd_refined 0.16 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.069 r_gen_planes_refined 0.003 r_bond_refined_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1108 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction XSCALE data scaling PHASER phasing