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YlmH bound to stalled 50S subunits with RqcH and PtRNA
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 42.999 r_lrange_other 42.999 r_mcangle_it 17.948 r_mcangle_other 17.948 r_scangle_it 13.615 r_scangle_other 13.615 r_dihedral_angle_6_deg 13.23 r_dihedral_angle_3_deg 13.125 r_mcbond_it 9.997 r_mcbond_other 9.996
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 42.999 r_lrange_other 42.999 r_mcangle_it 17.948 r_mcangle_other 17.948 r_scangle_it 13.615 r_scangle_other 13.615 r_dihedral_angle_6_deg 13.23 r_dihedral_angle_3_deg 13.125 r_mcbond_it 9.997 r_mcbond_other 9.996 r_dihedral_angle_1_deg 8.351 r_scbond_it 7.878 r_scbond_other 7.878 r_dihedral_angle_2_deg 2.975 r_dihedral_angle_other_2_deg 1.375 r_angle_refined_deg 1.089 r_angle_other_deg 0.422 r_nbtor_refined 0.217 r_metal_ion_refined 0.198 r_ncsr_local_group_1 0.195 r_symmetry_nbd_other 0.166 r_nbd_refined 0.147 r_xyhbond_nbd_refined 0.122 r_chiral_restr_other 0.085 r_symmetry_nbtor_other 0.076 r_symmetry_xyhbond_nbd_other 0.074 r_chiral_restr 0.044 r_gen_planes_refined 0.009 r_bond_refined_d 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_ext_dist_refined_b
Sample 50S ribosomal subunit with stalled P-tRNA-nascent chain, bound by YlmH
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 3770 Reported Resolution (Å) 3.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 400 Maximum Defocus (nm) 900 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO 1.8.3 CTF CORRECTION RELION 4.0.1 INITIAL EULER ASSIGNMENT RELION 4.0.1 FINAL EULER ASSIGNMENT RELION 4.0.1 RECONSTRUCTION RELION 4.0.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 2550984