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Electrostatic-Mediated Tetramerization of the Coiled-Coil Domain in TRIM29
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Other one helix with 40 alanines
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.7 295 10% glycerol, 38% MPD, and 0.1M Acetic acid pH4.7
Crystal Properties Matthews coefficient Solvent content 2.7 54.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.05 α = 90 b = 47.63 β = 90 c = 107.51 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.97741 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.27 8 96.9 0.071 0.999 14.5 9.1 5400
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.27 2.39 98.8 0.319 0.985 8.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.27 7.981 5394 392 95.757 0.23 0.2267 0.2266 0.2751 0.2753 86.024
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.301 2.596 -7.897
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.127 r_dihedral_angle_3_deg 20.319 r_dihedral_angle_4_deg 18.121 r_lrange_it 17.273 r_scangle_it 16.004 r_scbond_it 10.714 r_mcangle_it 7.953 r_mcbond_it 6.261 r_dihedral_angle_1_deg 4.247 r_angle_refined_deg 1.785
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.127 r_dihedral_angle_3_deg 20.319 r_dihedral_angle_4_deg 18.121 r_lrange_it 17.273 r_scangle_it 16.004 r_scbond_it 10.714 r_mcangle_it 7.953 r_mcbond_it 6.261 r_dihedral_angle_1_deg 4.247 r_angle_refined_deg 1.785 r_nbtor_refined 0.306 r_nbd_refined 0.23 r_symmetry_nbd_refined 0.226 r_symmetry_xyhbond_nbd_refined 0.189 r_chiral_restr 0.108 r_xyhbond_nbd_refined 0.076 r_bond_refined_d 0.008 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 744 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHENIX phasing