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Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6M9K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 293 0.48 M sodium phosphate monobasic monohydrate, 1.2 M potassium phosphate dibasic
Crystal Properties Matthews coefficient Solvent content 2.13 42.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.81 α = 90 b = 68.252 β = 90 c = 70.888 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2020-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9793 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 35.444 80.1 0.062 14.1 6.2 25018
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.59 21.2 1.217 1.33 0.526 0.409 1.2 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.482 34.149 25017 1215 80.106 0.183 0.1815 0.181 0.2202 0.2196 29.448
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.246 0.141 -0.387
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.653 r_dihedral_angle_6_deg 14.343 r_lrange_other 9.075 r_lrange_it 9.065 r_scangle_it 7.751 r_scangle_other 7.747 r_dihedral_angle_1_deg 6.828 r_scbond_it 4.935 r_scbond_other 4.931 r_mcangle_other 4.365
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.653 r_dihedral_angle_6_deg 14.343 r_lrange_other 9.075 r_lrange_it 9.065 r_scangle_it 7.751 r_scangle_other 7.747 r_dihedral_angle_1_deg 6.828 r_scbond_it 4.935 r_scbond_other 4.931 r_mcangle_other 4.365 r_mcangle_it 4.363 r_dihedral_angle_2_deg 3.563 r_mcbond_it 3.03 r_mcbond_other 3.024 r_angle_refined_deg 1.584 r_angle_other_deg 0.531 r_symmetry_nbd_refined 0.296 r_symmetry_xyhbond_nbd_refined 0.252 r_nbd_refined 0.218 r_nbd_other 0.201 r_nbtor_refined 0.177 r_symmetry_nbd_other 0.173 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.079 r_symmetry_nbtor_other 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1258 Nucleic Acid Atoms Solvent Atoms 149 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling MOLREP phasing